Molecular Work NEIKER: Mol_NEIKER
ANNEX Molecular Work: MOL_Annex
All NEIKER Results are displayed in EXCEL books or PDF files which can be displayed and downloaded
The following Structure is implemented:
Differential Expression under Stress: contains the results of Differential Expression analysis including an EXCEL book with all results.
Candidate Gene Detection: Presents a link to the Candidate Gene (CG) Database with information about the CG, amplicon and primers to be used.
Association Mapping and Model Building: contains the corresponding results in 4 EXCEL books (see below).
Allele Specific Primers: Contains all results of Allele Specific Primers as ZIP file.
More details about the contents can be found in the Link above (PDF): “MOL_NEIKER” and its annex with partial views of all mentioned EXCEL books and its worksheets
Association Mapping and Model Building Results:
Are organized in 4 EXCEL books with many worksheets each:
PATXF, PATRF, PATXS and PATRS (as described)
Each of these EXCEL books have identical structures of Worksheets
XXXsta: Worksheet with list of CG and its alleles (haplotypes).
CGlist: Worksheet with list of AMPLICONS and sequences
CG_AL: Worksheet with list of CG SNP (only relevant for PATXS and PATRS SNP projects)
CG_GT: Worksheet with genotypic presence/absence (1/2) values of each GT for each CG
Traits: Worksheet with trait values used for the analyses
AM-AL: Association Mapping results for Allele models
AM-ALs: Summary of AM results for all Traits
Model: Correlations and Regression between predicted and observed values
BV: Breeding values for each accession and trait (not sorted)
PP-AL: Performance Prediction Matrixes for any cross between two genotypes.
MRR-AL: Most efficient markers determined by multiple regression expressing large part of the variance
TOPCR-AL: Top Crosses for each trait as extracted from PP-AL matrixes
SNP Projects contain additional analogous Worksheets for Allele Combination (AC) Models:
(AM-AC, AM-ACs, PP-AC, TOPCR-AC)